Hi all, I downloaded some illumina RNA seq files which are with .txt extension but they are FASTAQ files..could some one tell me how to use Tophat to find the novel splice junctions from the these files..I just wanna know the input format for the Tophat and the tools used to obtain the format... thanks...and the codes used in the tophat....

asked 03 Oct '10, 22:39

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sumanth
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edited 03 Oct '10, 22:39

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Asked: 03 Oct '10, 22:39

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Last updated: 03 Oct '10, 22:39

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